PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B00092.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 292aa    MW: 32429.4 Da    PI: 5.3876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B00092.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12131179355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Pahal.B00092.1 131 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 179
                     58**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.48E-11126183No hitNo description
SuperFamilySSF474591.03E-17126194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-18128195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9131179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MYSPPCTDPE SEDNQCFAIG TNLLASLDHA MDFDEPIIFP MSNVGVQEGV QLYNSAGDTQ  60
LSRNMNTGKR LKGGKRKGSG EDSSSLHSID ETGALLQREV SRECPDEKPG DAGTNREDYV  120
HVRAKRGQAT NSHSLAERFR REKINERMKL LQDLVPGCNK ITGKAMMLDE IINYVQSLQR  180
QVEFLSMKLS AISPELNRDL DLQDILCSQD AHAAFAGYSP QMSSVHLNLF RASQQGFSRP  240
EPYGMTPNPA NVHVARPVQQ LLQLPAFPQR GVVWDEEHRT ILPDAFTSDI Q*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0622160.0BT062216.1 Zea mays full-length cDNA clone ZM_BFb0227P23 mRNA, complete cds.
GenBankKJ7267920.0KJ726792.1 Zea mays clone pUT2278 bHLH transcription factor (bHLH3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698404.10.0PREDICTED: transcription factor bHLH76-like
RefseqXP_012698405.10.0PREDICTED: transcription factor bHLH76-like
TrEMBLK4AL410.0K4AL41_SETIT; Uncharacterized protein
STRINGSi039620m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.18e-47bHLH family protein